Joy, no mathematical theorem is a scientific truth. It's a mathematical truth; that's what "theorem" actually means. Science and mathematics are not identical, even though we speak informally of the "mathematical sciences."
From the beginning and to this day, I have maintained that there is not a mathematician in the world who will agree with you that a theorem can be disproved. If that were the case, we wouldn't need mathematics to describe the natural world -- because we couldn't distinguish between events and numbers. That is, in fact, the very weakness of Bell's theorem that you spotted -- whether you are consciously aware of it or not -- and corrected.
Bell's theorem is perfectly sound as a theorem of arithmetic; on the interval {0,oo} there exist integers such that a bijection dependent on orientation of copies of N on the plane compels an inequality of the bijective sets. Easy to prove.
Problem is, the plane is not orientable. The existence theorem in arithmetic applied to Bell's experiment has the observer orienting the events by fiat, and ordering the numbers by the rules of arithmetic, and hence we get an observer created reality.
You are absolutely right, and I am your strongest defender -- a topology solution answers the challenge to have an objective, non-anthropocentric physics with a natural orientability that obviates nonlocality and preserves the observer's free will. I'm no voice in the wilderness, either -- I agree without qualification with what Boris Tsirelson told you on his Wikipedia talk page: "Evidently, your idea of Nature is substantially different from that of EPR, Bell and many others. Basically, Bell theorem says that Nature cannot be what is was assumed to be. Quantum theory proposes one new kind of Nature. You propose another new kind of Nature. So what? It will be exciting if your proposal will ultimately work better that quantum theory. But even that will not disprove Bell theorem. If the old kind of Nature is dead anyway, then Bell theorem is alive. So, here is your choice. Either you waive your author rights on the S^3/S^7 physics and kill Bell theorem, or you keep your author rights on the S^3/S^7 physics and withdraw your claim against Bell theorem. Wow! Your decision will tell us, whether you really hope that your S^3/S^7 physics will replace the quantum theory, or not. Surely you do not want to miss Nobel price and instead win a battle on Wikipedia! Boris Tsirelson (talk) 10:02, 4 June 2012 (UTC)
Trust, Joy that your physics *does* work better than quantum theory, and leave the theorem proving to the mathematicians. For surely, a purported disproof is identical to a proof which disproves itself. You'll never be able to escape that logical strait jacket. Don't let them put you in it!
As always, all my best,
Tom