Dr. D'Ariano,
Hi. I enjoyed reading your essay and think your type of reasoning where you try to develop "subroutines" for the universe that "stringently derive from few very general principles" is exactly the type of minimum assumption, start-with-the-basics type reasoning that I wish more physicists and philosophers would use. That's what I advocate in my essay as well. I do have some comments and questions but don't want these to distract from my overall very favorable impression of your essay. The comments are:
1. In regard to holism:
A. I completely agree. My view is that a thing exists if it's a grouping defining what is contained within. Based on this, a cloud, for example, is not just the component water molecules inside the cloud. Each of these molecules exists on its own, but the grouping of them all together creates an entirely new existent state called the cloud. So, the cloud as a whole and the component water molecules are different existent states. Because of this, the properties of the cloud are not necessarily the sum of the properties of the component water molecules. This is as you said for the holism idea.
B. I think that our universe must have some kind of a most fundamental existent state as its foundation. Whether this is called an it, a bit, a particle, a quantum field, etc. doesn't matter. They're all just different names for an existent state. Also, the most fundamental existent state would have no subunits and no component parts (otherwise, it wouldn't be the most fundamental existent state). In this case, I think the properties of the whole (holism) are the same as the properties of the parts (reductionism) because there is only one part.
2. In my thinking, I don't distinguish between "physical", "material" objects and "immaterial support", "abstract" states. "Physical" and "abstract" are just words for existent states existing outside the mind and inside the mind, respectively. Even the "immaterial support" quantum systems and their probability distributions that you mention are existent states in that they are embodied in or derived from existent states. Also, if they didn't exist, why are we talking about them? So, I think it's more useful to focus on the idea that there's an existent state at the heart of our universe, and whether this state is called a quantum system, probability distribution, physical object, etc. doesn't matter; instead, we should try to derive a physical theory from the properties of this existent state. And, you did this with your qubit idea. This type of reasoning is why I like your essay.
3. In regard to objects:
A. You mention on page 5 that "an object must be located in space and time", which seems to imply that different objects have different locations in space and time. This then seems to answer the question raised by the Theseus' ship and teleportation paradoxes. The copied ship and person are not the same objects as the originals. They exist in different spatial locations and times. Also, the statement on page 6 that "matter is everywhere the same" isn't quite accurate, I think. A particle of matter may have the same properties in all locations, but if two seemingly identical particles exist in different spatial locations and times, then they're still different objects. Or, I'd prefer to say that they're two different existent states. Every existent state exists within a certain domain (location).
B. Also, about the phrase "an object must be located in space and time", I think that the existence of the most fundamental of existent states/objects is what creates space. That is, space is just a collection of existent states/objects, each of which would then specify a location within this space.
Anyways, very good essay. Thanks!
Roger Granet