Hi Phil,
Congrats for this fantastic Essay which discusses a issue that I think to be fundamental. Here are my comments/questions:
1) The problem of the peer review process is serious and it is directly connected with the issue of freedom in science. This is a controversial issue. Although I work essentially within mainstream physics, I criticize some points of the same mainstream physics and I am all in favour of being open minded about alternatives, but they must be properly formulated and plausible scientific proposals. Freedom in science is a good think, but endorsing crackpot nonsenses is evil instead.
2) The issue that "the ones who decide the truth have self-interests driven by the funding that supports them" is sadly what govern "scientific politics".
3) I think that various "Bias" are consequence of economic interests.
4) I am not sure that Higgs boson has been really detected.
5) I agree with your point on energy conservation in general relativity but I think a clarification is needed. Based on Einstein Equivalence Principle, energy is coordinate dependent in general relativity. But, when we fix the coordinate system, energy conservation works.
6) I think that the importance of citations in determining the ultimate importance of a research work is largely overestimated.
7) The issue that "it is common for good papers to be rejected by top journals" sometimes is extremely ridiculous. I know of papers rejected by a top journal for which, after published by another journal, the authors obtained the Nobel Prize in physics...
8) The issue that "the UK government spent £580 million on the drug Tamiflu to combat flu epidemics, only to learn that the research was flawed and not properly checked" is only one of a big number. In fact, the problem of "scientific politics" becomes dramatic when it concerns medicine because it interacts with people's health. I think that "mainstream medicine" is completely governed by pharmaceutical companies which have interest in nursing people rather than in recovering. This is terrible and shameful.
9) I strongly endorse your 6 basic principles for a new peer-review.
10) I appreciate your viXra website and sometimes I submit my papers to it. On the other hand, in open archives there is the opposite problem to see published crackpot papers together with good ones.
As I previously wrote, I find this Essay fantastic. Thus, I am going to give you an high rate accordingly.
I hope you will find the time to read, comment and rate my Essay (Maybe you remember my pioneering work on this issue was originally rejected by arXiv. I discussed this issue with you 3 years ago. Thus, I originally submitted it in viXra. Arxiv accepted it only after is acceptance by JHEP).
I wish you best luck in the Contest.
Cheers,
Ch.