Dear Joe,
Thank you for reading and commenting on my essay.
I am not sure if I understand correctly what you are saying, but it seems that you reject the entire concept of modern science. While every snowflake is strictly unique, science seeks the regularity and reproducibility in nature, and to describe this regularity (in form and behavior) in quantitative terms. Quantitative modeling of reproducible behavior is the realm of mathematics. The fact that mathematics accurately describes physical reality, at least in many cases, merely reflects this regularity.
My essay focuses on the difficulties associated with inappropriate mathematical models, applied specifically to quantum theory. Models may have embedded assumptions, which can lead to non-physical predictions. But if the math is sufficiently abstract and divorced from realistic pictures, it is difficult to clearly identify these assumptions. Furthermore, math can only be a partial guide to the development of future physical theory, which must ultimately come from experiments and physical intuition.
Alan