Dear Alan,
Given that I already stated in our exchange on my blog where I stand on the likelihood that quantum mechanics will be overturned, let me point out some of the positive aspects of your paper that stood out to me:
1. You made effective use of hyperlinks to help anyone who needs a refresher on a particular concept to attain it
2. You made what appears to be the strongest case that could be made, given where your theory currently stands
3. You pointed out honestly the gaps and where your theory needs to be developed further in order to challenge quantum mechanics. That speaks very much to your integrity.
4. Your explanations are clear and crisp, and your writing is elegant
5. You were careful to point out where and how your theory differs from the orthodox view
A couple additional comments:
a. Regarding your call for quantum entanglement experiments with superconducting technology-based photon detectors, you may wish to consider corresponding with some of the experimentalists in that field. I suspect that if you make a cogent case, Nicolas Gisin might be a good person to talk to about designing an experiment that can close the loophole you see.
b. I understand the current dissatisfaction with quantum mechanics. It doesn't have any overarching principles that "seem intuitive" and the quantum correlations frankly don't seem to make sense if you take relativity at face value. In the second part of my series I will present (among many other unfamiliar ideas) both an overarching principle which has a tautological character (and therefore should be obvious) and a novel kind of mathematical object underlying the quantum state which shows that, as bizarre as it may sound to you at the moment, there is no contradiction between special relativity and the seemingly non-local phenomena (i.e. there is no influence of any kind traveling at v>c. At least, it seems, we agree on that). I would very much appreciate your thoughts once I finish and post the second paper.
All the best,
Armin