Dear Rich
I enjoyed reading your essay and thank you for reading mine and referring to it when discussing some points. In fact I found it refreshing that you have tried to read so many fqxi essays and found some common themes among us unwashed rebels storming the Bastille of physics. Some thing is gotta give!
Your discussion of photons, constant speed of light (CSL) and phenomena relating to c/n, the absorption and emission of light and phenomena studied by Jackson all require more time to study and assimilate. However I find that discussions of relativity can be easier if one discards once and for all the CSL as a postulate. Because of the Lorentz transformations, the measured speed of light in inertial frames will turn out to be constant anyway. The payoff for discarding CSL as a postulate is when one considers gravitational fields as media of various optical density in which the speed of light slows down less than c, as happens when a car decelerates to take a curve. General Relativity would then becomes infinitely simpler as explained briefly in my essay, and in more detail in my 2005 Beautiful Universe Theory on which it is based.
I have suggested new starting points, and am gratified that they fit right in with some of the other exciting new ideas and findings, particularly Reiter's wonderful experimental findings disproving the photon-as-particle. You have described the dilemmas facing physics well, but things moving, Recognizing that there are foundational problems, as this fqxi contest theme shows, is an important step. Jackson's idea of combining our ideas is good and may be possible as a sort of internet wiki project. One day the great frozen logjam you describe in people's minds will thaw and a rush of new ideas will enlighten the world with new truths.
I wish you the best of luck now, and then.
Vladimir