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Dear Ian,
I read your insightful essay with great interest. Contrary to what has been stated by another commentator, my position is that you cannot apply reductionism to any limit in physics. Limits to reductionism starts in physics itself. Then when it goes to the next higher levels, the relation between the parts and the whole becomes even more complex.
Nevertheless, reductionism is a human epistemological tool which cannot be dispensed with however much we fight against it. Human knowledge develops through the combined process of analysis and synthesis. Dismissing reductionism is like throwing the baby with the bath water.
But in using this tool we have to understand that there is a discrepancy between mathematical parts naively conceived, and their empirical counterparts.
A photon breaks up into an electron and a positron is pair production. We find that the sum of the two parts is greater than the whole that broke up into two.
In discussion of thermodynamics, a popular example of irreversibility is a broken cup, which cannot be restored to the original state by putting the pieces together. Why they cannot be brought together is that in the break up process the pieces gain energy from the field. With this gain of energy their innate cohesive power to stick to one another is lost.
Nature's way of cohesion is extraction of fractions of energy from the parts, and their mutual deficiency is overcome by sharing their intrinsic energies and forming a whole body. This is why we find in nature that the sum of the energy of the parts is always greater than that of the whole. In the reverse process, when a whole breaks up into parts, there is an influx of energy from the field causing a repulsion between the parts.
In relativity we have two gamma-factors. We come across the first in say the expression of kinetic energy = Mc2[ 1/(1- v2/c2)1/2 - 1)]. Here v is the velocity of the particle. This gamma-factor arises due to loss of fractions of energy when Mc2 and pc (in the energy-momentum equation) fuse together to form a system.
The second gamma-factor = 1/(1-u2/c2)1/2 we come across in the Lorentz transformation. Here u is the "velocity of the reference frame" (not the velocity of the particle). This is the result of breaking up of the energy into two parts (as I explain in my essay) and this is the factor by which parts gain energy.
So we have to use the tool of reductionism knowing that there is a process going on which is not representable by linear addition. It is trigonometric. This process is dealt with in my essay in -Geometrodynamics.
I request you to have a look at my essay: http://fqxi.org/community/forum/topic/1549
And I look forward to hearing your comments.
Best regards,
Viraj