...continuing on from previous post:
Q9: [p5, Sec 7] 'Systems' are human creations projected onto Nature. That is, all systems are inherently deductive systems; their fit to real natural structure is an empirical matter. If it is "reasonable to assume PSR", it is because PSR is an imperial decree of reason itself.
R9: Humans can and do create formal systems that can represent aspects of the concrete world. But this is only useful to the degree that they map the nature of concrete systems that have their systems properties independently of the sense we make of them. Early systems theorists flirted with the idea of arbitrary system-boundaries in Nature, just as social scientists flirted with Constructivist ideas about concepts generally. Thankfully systems theory has founded its grounding in the realities of Nature, and Constructivism is now headed the same way. See also my response to your question 6.
Q10: I submit that empirical facts cannot be "self-evident or logically necessary". Only theorems provable within a deductive system can be so. That is, self-evident truths are human assertions. "Brute facts" may be "placeholders for discoveries and explanations yet to come whether or not "we assume PSR". What limits discoveries at deeper levels may not be any ontological structure or an ultimate bottom but epistemic limits.
R10: I'm not sure we have good handle yet on what counts potentially as an empirical fact, so would not like to exclude that there can be ones that are "self-evident or logically necessary".
You are right that truth-claims about Nature are human assertions, but if PSR is right then when they are true they must be true in virtue of properties that inhere in Natural things (something about Nature makes them true). If such a truth-claim is logically necessary the implication is that the part of Nature it represents cannot have been otherwise than it is. In our view the fact that concrete things have energy is such a claim.
Q11: [p6] It does not follow from "the 'ultimate stuff' must have energetic properties" that it "must have energy on average". Quite the contrary, in your earlier discussion (Sec 4), the instantaneous properties of virtual particles average out to "nothing".
R11: If the "ultimate stuff" did not have energy "on average" it would have no energy, and by definition it would then not be a concrete material substance any more. That would make it supernatural or non-existent, either of which option would render it unsuitable for grounding understandable explanations. So if PSR is true, then the ultimate stuff must have energy on average.
The instantaneous physical properties of the QV average out to "nothing", but its ability to change in physical ways (physical energy) cannot be nothing at any time. Its net physical energy is always positive, but the intensity of every specific manifestation of physical energy (e.g. charge, mass or spin) is zero.
Q12: [p8, Sec 10] Personally, I don't believe in any resolution of the mind-body problem that relies on "primitive properties of fundamental matter", other than its ability to self-organize. I believe the solution lies elsewhere. Penrose's "microtubules", for example, are no more plausible than Descartes' pineal gland.
R12: I agree with you that microtubules and pineal glands are implausible foundations for an account of psychonic properties. However, the ability to self-organise leads only to ordered complexity, and does not seem to have the 'makings' for the emergence of qualities such as subjectivity, qualia, intentionality, etc. from physical or spatial properties, as e.g. David Chalmers has argued. I agree that self-organisation is a crucial factor in cosmological evolution, but I do not see how it could be sufficient if you start with ultimate stuff that potentially has only spatial, physical and organisational qualities.
Dan, thanks again for reading our essay so carefully, and for your interesting questions. There is clearly much overlap between our concerns, and our essays clearly target similar foundational questions. Good luck with yours, we will be posting some comments there soon.
Best wishes,
David.