Dear Steven P Sax,
Yours is the last essay posted in this contest. I was eager to know what it contained. You say, "But even those postulates rely on some type of intuition, which ultimately must come to terms with our knowledge of physical reality if they are to represent it". Everyone will agree with this, though each will have his own version of 'physical reality'. What is your version of the 'physical reality'?
"When he presented his theory, most scientists (including Planck!) didn't consider this quantum concept to be realistic but believed it to be just a mathematical trick." This should have been the stand even now, a 'physicalist' stand, as I would like to call it. Please go through my essay: A physicalist interpretation of the relation between Physics and Mathematics.
"But if you shine the laser for only half the time - a half pulse - the electron goes into a superposition of both the ground and excited states". A superposition? The actual physical situation has been explained by you clearly: "What this means physically is if you attempted to measure the energy of the electron you would have a 50% chance of measuring the energy at the ground state, and a 50% chance of measuring it at the excited state". Explaining the '50% probability' as superposition is illogical, especially when you argue that this 'superposition' is a 'physical situation' that quantum computer offers. In my opinion, superposition goes against physical reality.