Dear Brian,
Re crystallisation:
Except in the eye of the beholder, has anything mysterious "emerged" with crystallisation, temperature, or weather? If a system is 100% mechanistic, where all outcomes are 100% determined by constraints, the environment and "laws of nature", then no outcome is more emergent or mysterious than any other outcome.
But if quantum symmetry breaking is involved, then new information has in effect been input to the system. To paraphrase Wheeler: new information is created in quantum phenomena; this new information is not a deterministic consequence of the above-described mechanisms. I note you quote Wheeler in your essay, but a more telling quote of Wheeler's is: "Each elementary quantum phenomenon is an elementary act of 'fact creation'" [1]. If new information has been in effect non-mechanistically input to the system, then you cannot claim that the crystallisation outcome has somehow mysteriously "emerged" from a deterministic system.
Re "I envisage a different kind of picture, involving e.g. concepts such as nonlinearity, and fractality, rendering the kind of failures you refer to irrelevant":
The "kind of failures" I refer to are not irrelevant. Nonlinear systems and fractals are fully deterministic systems where some outcomes or behaviours might appear to "emerge", but in fact no outcome is more emergent or mysterious than any other outcome.
1. Quoted in QBism: Quantum Theory as a Hero's Handbook, by Christopher A. Fuchs and Blake C. Stacey, https://arxiv.org/abs/1612.07308v2 .