Dear Markus Mueller,
You observe that orthodoxy is largely based on 'the lesson of Copernicus'. I address a specific instance of this in my essay which reviews the historical basis of special relativity.
You further note that "the orthodox view is incomplete", which is almost the basis upon which FQXi contests are held. I, and many participants in these contests, believe as you appear to that mind does not 'emerge' from matter. My previous essays have proposed that consciousness is the essential nature of a field, indivisibly merging awareness and matter. I have found it valuable to investigate the self-interaction that arises in such case, and I give you an example here.
As is quite popular today, you suggest a 'brain scan' that results in a "perfect copy" of one's brain in the form of a computer simulation. Since computers are logical machines, this has the effect of building a logical model of the mind. Many, if not most approaches to modeling the mind call on such simulations.
But if consciousness is truly associated with the self-interactive field, then it is not just the logic of synaptic firings, but it is the dynamical 3D field interactions that accompany the flows in axons and neurons, and that simply cannot be captured in a software simulation. Thus I hold out no hope for this approach.
This is presented as an aside; I do not interpret your essay as depending on the ability to simulate the mind. Certainly clever logical simulations exist and will continue to be built. But if the fundamental reality you suggest actually exists, it won't be copied.
I invite you to read my essay and comment.
Best regards, and good luck in the contest,
Edwin Eugene Klingman