James,
"My question was directed at understanding whether or not the inputs to be used carryover meaning resulting from the methods used in the earlier experiments that yielded them?"
Thank you -- this is one of the most important questions in the world to me, personally. A great deal of my own research is devoted to answering it.
I have disclosed an extreme bias of mine, in rejecting Bayesian inference. I see it as the crux of your question, which I think can be reformulated as, "Do prior results determine future probabilities?"
Most of those who work in quantum theory and computer science exercise Bayesian assumptions routinely -- and they say, "yes.," that there is a definite probability for such and such event on the closed interval [0,1], and it can be calculated from prior probabilistic results. Then the Bayesian belief in that result is calculated for the combined probability, which is tested against actual physical results, and so on.
Probability is added to probability, based on one's faith in their own personal belief and experience.
This creates an illusion that reality is foundationally probabilistic -- that probabilities are additive. The statistical method that you are probably most familiar with, and that supports the deterministic philosophy that you and I share, is called "frequentist." This is a purely empirical result, based on a long run of independent (Bernoulli) experimental trials, in which one's confidence of the real probability on [0,1] grows with the number of trials conducted (law of large numbers).
I take my disdain for Bayes' theorem a step further, and demand absolute independence of the linguistic model (an equation, or a computer program) from the empirical result. Language and meaning must be shown to correspond 1 - 1 without probabilistic inference, for determinism to hold as a foundational principle.
"My second question was: Does the substitute method used in the computer simulations serve faithfully in place of the original method? Here maybe only theoretical discussion would make the answer clear. In that case, it probably won't be clear to me. That is ok, it is my own failing. None of this was intended to harm anyone's position. I am following and not leading."
I'm following, too. I have never tried to disguise the fact, though, that I follow from a specific point of view, a bias that resists introducing the bias of personal belief into the measurement framework of a theory.
All best,
Tom