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Dear Matt,
Congratulations on a well-written and timely essay! I particularly appreciate your recognition of the very strong conditions imposed even by admitting the rationals. A few remarks come to mind:
1. An important point to consider in regard to the number systems you mention is their order-theoretic structures. For example, the rationals, as you point out, are infinitely divisible, which corresponds to the interpolative property in order theory. One reason why this is fundamentally important is because of the prominence of order theory in describing the causal structures that arise in certain models of spacetime microstructure.
2. Another reason why the underlying number system is important is because the properties of particles in the standard model are determined by the symmetries of Lie groups, which live and die with the continuum. This is an example of how the decision to use the reals is not merely a philosophical issue of postulating structure that cannot be measured or "filling in the gaps."
3. There are a couple of essays on this thread (the ones by Torsten Asselmeyer-Maluga and Jerzy Krol) that explore surprising consequences of admitting nonstandard models of natural and real numbers. (This, generally speaking, is going in the opposite direction and admitting much "larger" systems such as in nonstandard analysis.) You may be interested in these if you have not yet read them.
My own essay here discusses the order theoretic and representation theoretic implications of rejecting the continuum and working with causal structures. If you are interested, I would appreciate your thoughts. Take care,
Ben Dribus