Dear Flavio, Very interesting and groundbreaking essay, well informed by history, philosophy, physics, and mathematics (in the Newtonian tradition criticized here for other reasons!). It seems to me that we are only at the beginning of dealing with the drawbacks of the use of the real numbers in physics, and similar idealizations which have led to the conclusion that determinism itself is an idealization, even or especially in classical physics (which is what I take to be the main message of this essay). My own hunch is that intuitionistic and constructive mathematics may provide a way out, although, as Hilbert feared, this means we are driven out of Cantor's Paradise and we have to start all over again. In view of the tremendous success of even classical physics (think of putting men on the moon) this might be too much to ask, so there should be some result to the effect that physics based on the real numbers gives valid results with high probability (from the point of view of the new physics based on finite approximations), or so. Alternatively, think of results (due to Gödel and others) that theorems of classical mathematics are valid even intuitionistically if they are replaced by versions that are classically equivalent but intuitionistically different (typically by adding a double negation). In this spirit, results of classical physics based on the real numbers should be replaced by results that are empirically equivalent but logically different in your system, and provable in that system.
Best wishes, Klaas